Reconstructing species phylogeny from nucleotide sequences with Phylm

When researchers need to reconstruct a relatively large phylogeny for multiple genes (e.g. sequenced de-novo and obtained from the NCBI database), after source sequences are obtained, aligned and combined into a single matrix, the last important step is phylogeny reconstruction. Here we present a simple way reconstruct a phylogeny from the DNA matrix based on multiple genes with Phyml tool.