The Start

It has been six months since Skye had walked out from the BUS in Hong Kong, leaven three out of four members believing she has betrayed them. However their work had to go on but they never stopped looking for the missing consultant.

When Centapied then steps up their game Fury sees no other way then to send in the only Avenger he can. After, no one on the team has ever before come eye to eye with this new Avenger, or have they?

AoS Avengers AU. Starts after AoS Season 1 episode 5

Part 1 of The S.H.I.E.L.D Protocols
Part 2 is Deep Shadowd Condition
Part 3 is Theta Protcol